makeIC.py

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import h5py
from numpy import *
 
# Generates a swift IC file for the 1D Sod Shock in a periodic box
 
# Parameters
gamma = 5.0 / 3.0  # Gas adiabatic index
numPart_L = 800  # Number of particles in the left state
x_min = -1.0  # left box boundary
x_max = 1.0  # right box boundary
rho_L = 1.0  # Density left state
rho_R = 0.125  # Density right state
v_L = 0.0  # Velocity left state
v_R = 0.0  # Velocity right state
P_L = 1.0  # Pressure left state
P_R = 0.1  # Pressure right state
fileName = "sodShock.hdf5"
 
 
# ---------------------------------------------------
 
# Find how many particles we actually have
boxSize = x_max - x_min
numPart_R = int(numPart_L * (rho_R / rho_L))
numPart = numPart_L + numPart_R
 
# Now get the distances
delta_L = (boxSize / 2) / numPart_L
delta_R = (boxSize / 2) / numPart_R
offset_L = delta_L / 2
offset_R = delta_R / 2
 
# Build the arrays
coords = zeros((numPart, 3))
v = zeros((numPart, 3))
ids = linspace(1, numPart, numPart)
m = zeros(numPart)
h = zeros(numPart)
u = zeros(numPart)
 
# Set the particles on the left
for i in range(numPart_L):
    coords[i, 0] = x_min + offset_L + i * delta_L
    u[i] = P_L / (rho_L * (gamma - 1.0))
    h[i] = 1.2348 * delta_L
    m[i] = boxSize * rho_L / (2.0 * numPart_L)
    v[i, 0] = v_L
 
# Set the particles on the right
for j in range(numPart_R):
    i = numPart_L + j
    coords[i, 0] = offset_R + j * delta_R
    u[i] = P_R / (rho_R * (gamma - 1.0))
    h[i] = 1.2348 * delta_R
    m[i] = boxSize * rho_R / (2.0 * numPart_R)
    v[i, 0] = v_R
 
# Shift particles
coords[:, 0] -= x_min
coords[:, 1] = 0.5
 
# File
file = h5py.File(fileName, "w")
 
# Header
grp = file.create_group("/Header")
grp.attrs["BoxSize"] = boxSize
grp.attrs["NumPart_Total"] = [numPart, 0, 0, 0, 0, 0]
grp.attrs["NumPart_Total_HighWord"] = [0, 0, 0, 0, 0, 0]
grp.attrs["NumPart_ThisFile"] = [numPart, 0, 0, 0, 0, 0]
grp.attrs["Time"] = 0.0
grp.attrs["NumFilesPerSnapshot"] = 1
grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
grp.attrs["Flag_Entropy_ICs"] = 0
grp.attrs["Dimension"] = 1
 
# Units
grp = file.create_group("/Units")
grp.attrs["Unit length in cgs (U_L)"] = 1.0
grp.attrs["Unit mass in cgs (U_M)"] = 1.0
grp.attrs["Unit time in cgs (U_t)"] = 1.0
grp.attrs["Unit current in cgs (U_I)"] = 1.0
grp.attrs["Unit temperature in cgs (U_T)"] = 1.0
 
# Particle group
grp = file.create_group("/PartType0")
grp.create_dataset("Coordinates", data=coords, dtype="d")
grp.create_dataset("Velocities", data=v, dtype="f")
grp.create_dataset("Masses", data=m, dtype="f")
grp.create_dataset("SmoothingLength", data=h, dtype="f")
grp.create_dataset("InternalEnergy", data=u, dtype="f")
grp.create_dataset("ParticleIDs", data=ids, dtype="L")
 
 
file.close()